correlation error: 'NoneType' object is not iterable

Tags

• type: bug
• priority: high
• status: closed, completed
• keywords: correlations, from github, high priority

Description

From GitHub

Dear Developer,

When calculating correlation:

(GeneNetwork error: 'NoneType' object is not iterable)

GeneNetwork tux01:gene:2.11-rc2-production-283af77a7 http://www.genenetwork.org/corr_compute ( 2:39PM UTC Feb 19, 2020)
'NoneType' object is not iterable (error)
  File "/export/local/home/gn2/production/gene/wqflask/wqflask/correlation/show_corr_results.py", line 473, in process_samples
    for sample in sample_names:

notes

codebase for gn2 correlation had a rewrite

and this is no longer an issue