💾 Archived View for thebird.nl › gn-gemtext-threads › index.gmi captured on 2023-07-22 at 16:26:05. Gemini links have been rewritten to link to archived content
⬅️ Previous capture (2023-07-10)
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./issues/autogenerate-documuntation-for-rdf.gmi
./issues/fix-correlation-table.gmi
./issues/search-results-for-SNPs-look-weird.gmi
./issues/add-search-syntax-hints.gmi
./issues/sample-data-caching-problem.gmi
./issues/generalize-tables.gmi
./issues/demo-generif-data-in-sparql.gmi
./issues/correlation-error.gmi
./issues/add-homology-track.gmi
./issues/support-searching-using-snp-names.gmi
./issues/add-pluto-notebooks.gmi
./issues/csv-metadata-not-commented-out.gmi
./issues/fix-case-attribute-editing.gmi
./issues/correlation_wrong_results.gmi
./issues/dump-genewiki-metadata.gmi
./issues/features/cis-trans-plot.gmi
./issues/fix-case-attribute-work.gmi
./issues/correlation_speed_issue.gmi
./issues/integrate-feed-analyser.gmi
./issues/fix-haplotype-name-overflow.gmi
./issues/sql-too-many-connections.gmi
./issues/quality-control/rewrite-qc-and-qc-uploads-in-python.gmi
./issues/quality-control/enumerate-all-qc-checks.gmi
./issues/quality-control/qc-checks.gmi
./issues/quality-control/gene-symbols.gmi
./issues/quality-control/qc.gmi
./issues/quality-control/ningle-file-upload-size.gmi
./issues/quality-control/ui-design.gmi
./issues/quality-control/big-file-upload-fails.gmi
./issues/genecup-running-as-root.gmi
./issues/correlations-script-to-build-text-files.gmi
./issues/error-zooming-chromosome.gmi
./issues/case-attr-edit-error.gmi
./issues/make-xapian-index-rebuild-conditional-on-database-checksums.gmi
./issues/fetch_trait_data_using_genofiles.gmi
./issues/simplify_data_set_py_in_gn2.gmi
./issues/fix-broken-builds-in-gn2-and-gn3.gmi
./issues/fetch-sample-data.gmi
./issues/error-when-fetching-snps.gmi
./issues/reset-password-on-container-rebuild.gmi
./issues/default-search-query-in-search-field.gmi
./issues/add-collection-import.gmi
./issues/custom_data_for_scatterplot.gmi
./issues/effect-size-for-gemma-is-a-must.gmi
./issues/bugfix_coupling_current_app_and_db_utils.gmi
./issues/probeset-metadata-upload.gmi
./issues/run-correlations-in-external-process.gmi
./issues/materialised-views-for-correlations.gmi
./issues/implement-parallel-correlation-with-rust.gmi
./issues/fix-collection-export.gmi
./issues/remove-external-js-code.gmi
./issues/redirect-http-to-https.gmi
./issues/search-results-presentation-designs.gmi
./issues/dataset_queried_twice.gmi
./issues/database-migrations.gmi
./issues/improve-sparql-results.gmi
./issues/add-metadata-to-traits-page.gmi
./issues/dump-genewiki-data-in-rdf.gmi
./issues/correlation-missing-file.gmi
./issues/add-mouse-data-from-klaus.gmi
./issues/broken-build-xapian.gmi
./issues/buggy-use-of-urljoin.gmi
./issues/do-not-conflict-with-random.gmi
./issues/mapping-haley-knott-regression-chromosome-zoom-in-bug.gmi
./issues/mapping-horizontal-scroll.gmi
./issues/add-target-column-in-pcorrs-table.gmi
./issues/correlations-all-samples.gmi
./issues/TempDataSet-object-has-no-attribute.gmi
./issues/search-queries-with-quoted-author-names-dont-work.gmi
./issues/unable-to-open-new-tabs-for-mapping-correlations-in-chrome.gmi
./issues/binderlite/error-regarding-static-assets-after-forwarding.gmi
./issues/binderlite/ansi2html_terminal_user_feedback.gmi
./issues/binderlite/return-canned-text-if-notebook-description-returns-none.gmi
./issues/binderlite/show_template_for_when_git_url_is_not_found.gmi
./issues/binderlite/add-regex-to-prevent-user-from-inputting-invalid-url.gmi
./issues/binderlite/add-spinner-for-submit-form.gmi
./issues/binderlite/use-root-file.gmi
./issues/binderlite/add-configuration-to-set-server-name.gmi
./issues/binderlite/open-files-directly-if-full-path-is-given.gmi
./issues/binderlite/start-building-a-gallery-view-for-various-notebooks.gmi
./issues/binderlite/finds-unknown-package-in-manifest.gmi
./issues/binderlite/integrate-styling-with-gn2.gmi
./issues/binderlite/kernel-dying.gmi
./issues/add-search-select-export-to-datatables-table.gmi
./issues/pre-cache-datasets.gmi
./issues/sample-data-not-appearing-in-phenotype-editing-page.gmi
./issues/failing-tests-on-gn2-20220803.gmi
./issues/fix-broken-utf8-chars.gmi
./issues/fix-genotype-filename-HSNIH-Palmer.gmi
./issues/remove-extraneous-pcorrs-options.gmi
./issues/notify-user-after-trait-edit.gmi
./issues/csv-error-ITP_10001-longevity-data-set.gmi
./issues/genenetwork/genenetwork2_configurations.gmi
./issues/genenetwork/environment.gmi
./issues/genenetwork/api-docs.gmi
./issues/genenetwork/genenetwork3_configuration.gmi
./issues/genenetwork/markdown-docs.gmi
./issues/genenetwork/add-license-page.gmi
./issues/genenetwork/genewiki.gmi
./issues/genenetwork/marker_covariates_in_rqtl.gmi
./issues/genenetwork/http-https.gmi
./issues/genenetwork/remove-elasticsearch.gmi
./issues/genenetwork/issue-404-in-logs.gmi
./issues/genenetwork/global-search.gmi
./issues/genenetwork/proxy-hard-coded.gmi
./issues/decouple-tasks-in-results-display.gmi
./issues/adding-traits-from-mapping.gmi
./issues/automated-testing.gmi
./issues/dump-sample-data-to-lmdb.gmi
./issues/correlations-time-out.gmi
./issues/global_search_phenotypes.gmi
./issues/search-hyphen-issue.gmi
./issues/trait-page-errors-on-cd.gmi
./issues/failing-menu-in-cd.gmi
./issues/correlations-return-fewer-results.gmi
./issues/slow-correlations.gmi
./issues/linking_genotype-files-to-datasets.gmi
./issues/search-results-not-quite-as-expected.gmi
./issues/uninformative-error-when-batch-submitting-unknown-strains.gmi
./issues/genotype-metadata.gmi
./issues/fix-load-rdf-script.gmi
./issues/enter-key-in-global-search-field.gmi
./issues/BXD102xBXD077F1-error.gmi
./issues/trait-page-mapping-bug.gmi
./issues/add-bulklmm-feature.gmi
./issues/global-search-connection-slow.gmi
./issues/traits-editing-failure.gmi
./issues/add-genotype-files-to-rdf.gmi
./issues/improve-presentation-of-search-results.gmi
./issues/gnbug/add-convenience-templates.gmi
./issues/gnbug/gnbug-show-closed.gmi
./issues/gnbug/add-transient.gmi
./issues/gnbug/recent-first-sort.gmi
./issues/gnbug/hide-stale-issues.gmi
./issues/capture-phenotype-state-in-a-hash.gmi
./issues/gn-volt-genofiles-parsing-integration.gmi
./issues/create-rdf-traits-page.gmi
./issues/metadata-caching-bug.gmi
./issues/do-bulk-query-for-correlation-results-display.gmi
./issues/add-sample-size-to-rdf.gmi
./issues/create-ui-language-for-gn2.gmi
./issues/genenetwork1/gn1-production-system-issues.gmi
./issues/genenetwork1/gn1-mapping-broken.gmi
./issues/genenetwork1/gn1-annotation-page-is-broken.gmi
./issues/genenetwork1/gn1-symbols.gmi
./issues/genenetwork1/gn1-pairscan.gmi
./issues/genenetwork1/gn1-github-problem.gmi
./issues/genenetwork1/gn1-slowness.gmi
./issues/genenetwork1/gn1-metadata-edit.gmi
./issues/genenetwork1/gn1-network-graph.gmi
./issues/cool-interfaces-we-should-emulate.gmi
./issues/add-edit-issue-link-in-tissue.gmi
./issues/gn1-annotation-page-is-broken.gmi
./issues/geno-correlation-bug.gmi
./issues/upload-genewiki-rdf-to-cd.gmi
./issues/enable-intergroup-analysis.gmi
./issues/parsing_genotype_files.gmi
./issues/missing-ci-cd-definitions-for-service-daemons.gmi
./issues/rqtl-mapping-throws-JSONDecodeError.gmi
./issues/CI-CD/configurations.gmi
./issues/CI-CD/genenetwork3-effective-user-id.gmi
./issues/CI-CD/migrate-to-python3.10.gmi
./issues/adding-principle-component-to-collection-error.gmi
./issues/document-all-virtuoso-instances.gmi
./issues/sorting-correlation-nan-vals.gmi
./issues/document-xapian-search-code-architecture.gmi
./issues/variant-browser-using-mm9.gmi
./issues/database-not-responding.gmi
./issues/metadata-edits-improvements.gmi
./issues/make-partial-correlation-tables-searchable.gmi
./issues/gemma/gemma-wrapper-has-incomplete-files.gmi
./issues/gemma/databases-getting-out-of-wack.gmi
./issues/gemma/report-missing-genotype-file.gmi
./issues/gemma/multivariate_gemma_hangs-issue243.gmi
./issues/gemma/GSL_ERROR_function_value_is_not_finite_in_brent.c-issue210.gmi
./issues/gemma/lmm-precomputed-scores.gmi
./issues/gemma/HS-Rat-crashes-gemma.gmi
./issues/design/branding-front.gmi
./issues/fetch-trait-names-for-phenotypes.gmi
./issues/render-images-in-tissue-web-output.gmi
./issues/edit-metadata-bugs.gmi
./issues/editing-bug-conflating-dataset_id-with-inbred_set_id.gmi
./issues/phenotype-correlation-error.gmi
./issues/automatically-find-broken-links-on-gn2.gmi
./issues/multi-trait-heatmap-failed.gmi
./issues/database-long-query-after-innodb-migration.gmi
./issues/fix-include-f1-parents-correlations.gmi
./issues/slow-sql-query-for-xapian-indexing.gmi
./issues/gn3-technical-debt.gmi
./issues/remove-elastic-search.gmi
./issues/genenetwork2-cd-sometimes-fails-to-restart.gmi
./issues/model-gn-menu-in-rdf.gmi
./issues/consecutive-crud-applications-when-uploading-data.gmi
./issues/systems/mariadb/ProbeSE.gmi
./issues/systems/mariadb/ProbeSetData.gmi
./issues/systems/mariadb/move-to-innodb.gmi
./issues/systems/mariadb/cleanup.gmi
./issues/systems/mariadb/ProbeSetXRef.gmi
./issues/systems/mariadb/ProbeData.gmi
./issues/systems/tux01-hard-disk-crash.gmi
./issues/systems/gn2-time-machines.gmi
./issues/systems/gn1-time-machines.gmi
./issues/systems/machine-room.gmi
./issues/systems/decommission-machines.gmi
./issues/systems/letsencrypt.gmi
./issues/systems/fallbacks-and-backups.gmi
./issues/systems/second-production-tux02.gmi
./issues/systems/tux01-ram-problem.gmi
./issues/systems/tux02-production.gmi
./issues/systems/reboot-tux01-tux02.gmi
./issues/fix-missing-genotype-files-for-gemma.gmi
./issues/remove_gn2_gn3_network_dependency.gmi
./issues/capture-data-on-BXDs-in-RDF.gmi
./issues/order-entries-in-csv-dump.gmi
./issues/global-search-results.gmi
./issues/authentication_authorisation/make-existing-data-public-view-by-default.gmi
./issues/authentication_authorisation/migrate-user-accounts-from-redis.gmi
./issues/authentication_authorisation/build-oauth2-client-registration.gmi
./issues/authentication_authorisation/use-authorisation-code-flow-for-authentication.gmi
./issues/authentication_authorisation/enable-user-masquerade.gmi
./issues/authentication_authorisation/migrate-user-collections.gmi
./issues/zero-repr-in-data-upload.gmi
./issues/guixify-llm-system.gmi
./issues/report-invalid-search-queries-over-api.gmi
./issues/correlation-timing-out.gmi
./issues/cant-use-guix-bioinformatics-with-guix-pull.gmi
./issues/per-service-profile-for-shepherd-services.gmi
./issues/improve-menu-generation-and-move-it-to-gn3.gmi
./issues/missing-python-modules-for-gn3.gmi
./issues/fix-gn3-python-3.10-linting-errors.gmi
./issues/correlations-fewer-result-than-expected.gmi
./topics/add-metadata-to-trait-page.gmi
./topics/riscv/building-guix-packages-for-riscv.gmi
./topics/riscv/debug-riscv-assembly-with-qemu-and-gdb.gmi
./topics/use-exceptions-to-indicate-errors.gmi
./topics/biohackathon/GNGSoC2023.gmi
./topics/quality-control/shapiro-wilk-test.gmi
./topics/phenotype-naming-convention.gmi
./topics/testing/mechanical-rob.gmi
./topics/testing/top-10-tests.gmi
./topics/testing/using-curl.gmi
./topics/RDF/genenetwork-sql-database-to-rdf.gmi
./topics/RDF/example-sparql-queries.gmi
./topics/xapian-scalability.gmi
./topics/setting-up-local-development-database.gmi
./topics/genotype-database.gmi
./topics/profiling_python_code.gmi
./topics/guix/run-postgres-in-container.gmi
./topics/running_pudb_from_external_environment.gmi
./topics/file-sharing/replace-ipfs.gmi
./topics/authentication/cli_utility_scripts.gmi
./topics/authentication/authentication-authorisation-design.gmi
./topics/authentication/password-reset.gmi
./topics/authentication/oauth2_clients.gmi
./topics/authentication/user-info.gmi
./topics/authentication/replace-hard-coded-auth-with-gn-proxy.gmi
./topics/authentication/user-registration.gmi
./topics/using-pdb-to-troubleshoot.gmi
./topics/gn1-migration-to-gn2/clustering.gmi
./topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi
./topics/gn1-migration-to-gn2/partial-correlations.gmi
./topics/building-a-guix-pack-for-sharing.gmi
./topics/automated-testing.gmi
./topics/notebooks/reproducibility.gmi
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./topics/notebooks/port-map.gmi
./topics/notebooks/binding-lite.gmi
./topics/notebooks/user-stories.gmi
./topics/notebooks/jupyter.gmi
./topics/notebooks/binderlite-cli.gmi
./topics/hpc/surfsara/snellius.gmi
./topics/data-science/Africa/AI-symposium-iHub-Nairobi-Kenya-2023.gmi
./topics/starting_gn2_and_gn3.gmi
./topics/gemini/cheatsheet.gmi
./topics/gemini/ideas_and_references.gmi
./topics/bnw/GN2-BNW-data-transfer.gmi
./topics/build-systems/pkgconfig.gmi
./topics/documentation/gn-hacking-documentation.gmi
./topics/documentation/gn-documentation.gmi
./topics/our-virtuoso-instances.gmi
./topics/CI-CD/utility-scripts.gmi
./topics/octopus/lizardfs/README.gmi
./topics/code-antipatterns.gmi
./topics/next-gen-databases/design-doc.gmi
./topics/next-gen-databases/modifying-dump-macros.gmi
./topics/next-gen-databases/dump-queries.gmi
./topics/xapian-search-queries.gmi
./topics/lisp/common-lisp-sly.gmi
./topics/lisp/define-condition.gmi
./topics/lisp/common-lisp-notes.gmi
./topics/lisp/lisp4schemers.gmi
./topics/lisp/tips-and-tricks.gmi
./topics/queries-and-prepared-statements-in-python.gmi
./topics/ci-rethink-slides.gmi
./topics/interesting-links.gmi
./topics/lmms/llm-metadata.gmi
./topics/useful-shell-scripts.gmi
./topics/systems/migrate-p2.gmi
./topics/systems/update-production-tux01.gmi
./topics/systems/nginx/configurations.gmi
./topics/systems/gn-services.gmi
./topics/systems/mariadb/precompute-mapping-input-data.gmi
./topics/systems/mariadb/mariadb.gmi
./topics/systems/mailer-opensmtpd.gmi
./topics/systems/hpc/performance.gmi
./topics/systems/hpc/octopus-maintenance.gmi
./topics/systems/orchestration.gmi
./topics/systems/dns-changes.gmi
./topics/systems/backup-drops.gmi
./topics/systems/restore-backups.gmi
./topics/editing/phenotypes.gmi
./topics/editing/info_files.gmi
./topics/editing/case_attributes.gmi
./topics/developing-against-gn.gmi
./topics/coding-guidelines.gmi
./topics/ui/adding-delete-button.gmi
./topics/ui/adding-terminal-output.gmi
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./topics/data-uploads/inserting-traits.gmi
./topics/data-uploads/datasets.gmi
./topics/data-uploads/reverse-from-file.gmi
./topics/data-uploads/inserting-data.gmi
./topics/uthsc-vpn-with-free-software.gmi