💾 Archived View for thebird.nl › gn-gemtext-threads › issues › improve-sparql-results.gmi captured on 2023-07-10 at 13:43:33. Gemini links have been rewritten to link to archived content

View Raw

More Information

-=-=-=-=-=-=-

Improve sparql results

Tags

• assigned: bonfacem
• type: improvement
• priority: high
• status: in progress
• keywords: RDF, SPARQL

For this query:

https://sparql.genenetwork.org/sparql?default-graph-uri=&qtxt=prefix%20gn%3A%20%3Chttp%3A%2F%2Fgenenetwork.org%2F%3E%0A%0ASELECT%20*%20WHERE%20%7B%0Agn%3Aspecies_mus_musculus%20%3Fp%20%3Fo.%0A%7D&format=text%2Fhtml&timeout=0&signal_void=on

• Investigate why we have duplicate results for

http://genenetwork.org/binomialName?

• Also, links with the "gn:" prefix should resolve. Move the documents to a Markdown document that is hosted in gn-docs; and then create an end-point on GN2 for that.

• How do we encode wikidata entries as part of a dump? E.g.

http://www.wikidata.org/entity/Q83310

• How do we ascertain that the wikidata entries are retained in the future?

• For 'taxon:' prefix use:

http://purl.uniprot.org/core/scientificName