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It is my intention to write my thesis in [[LaTeX]], by using [[Pandoc]] as my main conversion tool. I am noting here my process of defining my workflow.

pandoc -s in.md --citeproc -o out.pdf

• -s parses the output in one standalone file
• --citeproc activates citations, references and bibliography processing
• add --bibliography in the case a bibliography field is not present in YAML metadata for the document
• add --toc in the case a Table of Contents is intended to be added and a toc boolean (toc: true) is not present in YAML metadata for the document

--citeproc

--bibliography

--toc

Resources

• Setup for writing in Markdown, citing with Zotero, and publishing with Pandoc
• I wrote my thesis in Markdown, here’s how it went
• phd_thesis_markdown, a template
• pandoc-thesis, a template
• Delightful Open Science — tools, a repository
• Manubot
• The tools and services I used to write, edit and self-publish my book, by Sylvain Kerkour
• I take advantage of obsidian-citation-plugin in order to add citations to what I am writing in Obsidian
• Zotero best practices on Obsidian’s forum

Setup for writing in Markdown, citing with Zotero, and publishing with Pandoc

I wrote my thesis in Markdown, here’s how it went

phd_thesis_markdown

pandoc-thesis

Delightful Open Science — tools

Manubot

The tools and services I used to write, edit and self-publish my book

Sylvain Kerkour

obsidian-citation-plugin

Obsidian

Zotero best practices

Obsidian’s forum