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All starfleet ships are regularly fed small amounts of cheese similar to how humans get vaccine boosters. It helps to prevent against disease and infection. In the alpha quadrant, starship cheese is easy to research and manufacture, but after the USS Voyager (NCC-74656) was stranded in the delta quadrant, they quickly ran out of their supply, leaving her vulnerable to cheese-based infections. This is why Voyager had such an extreme reaction to the Neelix cheese.
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